Publications

2012

Carbonell, A., et al. Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants. Plant Cell 24, 3613–3629 (2012). 23023169.pdf (7.34 MB)
Zhang, C., et al. The Caenorhabditis elegans RDE-10/RDE-11 Complex Regulates RNAi by Promoting Secondary siRNA Amplification. Curr Biol 22, 881-90 (2012). 22542102.pdf (545.6 KB)
Kurth, E.G., et al. Virus-derived gene expression and RNA interference vector for grapevine. J Virol 86, 6002-9 (2012). 22438553.pdf (2.97 MB)

2011

Fischer, S.E.J., et al. The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications. PLoS Genetics 7, e1002369 (2011). 22102828.pdf (1.72 MB)
Cumbie, J.S., et al. GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences. PLoS One 6, e25279 (2011). 21998647.pdf (393.19 KB)
Hu, T.T., et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics 43, 476-81 (2011).
Cuperus, J.T., Fahlgren, N. & Carrington, J.C. Evolution and functional diversification of MIRNA genes. The Plant Cell 23, 431-42 (2011).
Zhang, C., et al. mut-16 and other mutator class genes modulate 22G and 26G siRNA pathways in Caenorhabditis elegans. Proc. Natl. Acad. Sci. U.S.A. 108, 1201-8 (2011). 21245313.pdf (5.95 MB)
Greenberg, M.V.C., et al. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics 6, 344-54 (2011). 21150311.pdf (4.93 MB)

2010

Smith, K.M., et al. Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex. Eukaryotic Cell 9, 1549-56 (2010). 20675579.pdf (793.24 KB)
Wei, T., et al. Formation of complexes at plasmodesmata for potyvirus intercellular movement is mediated by the viral protein P3N-PIPO. PLoS Pathogens 6, e1000962 (2010). 20585568.pdf (8.06 MB)
Cosson, P., et al. RTM3, which controls long-distance movement of potyviruses, is a member of a new plant gene family encoding a meprin and TRAF homology domain-containing protein. Plant Physiology 154, 222-32 (2010). 20584941.pdf (1.15 MB)
Cuperus, J.T., et al. Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis. Nature Structural & Molecular Biology 17, 997-1003 (2010). 20562854.pdf (1.38 MB)
Gleick, P.H., et al. Climate change and the integrity of science. Science 328, 689-90 (2010). 20448167.pdf (347.37 KB)
Dunoyer, P., et al. Small RNA duplexes function as mobile silencing signals between plant cells. Science 328, 912-6 (2010). 20413458.pdf (1.09 MB)
Fahlgren, N., et al. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. The Plant cell 22, 1074-89 (2010). 20407027.pdf (2.36 MB)
Garcia-Ruiz, H., et al. Arabidopsis RNA-dependent RNA polymerases and dicer-like proteins in antiviral defense and small interfering RNA biogenesis during Turnip Mosaic Virus infection. The Plant Cell 22, 481-96 (2010). 20190077.pdf (1.95 MB)
Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463, 763-8 (2010). 20148030.pdf (754.99 KB)
Lee, H., et al. Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis. Nucleic Acids Research 38, 3081-93 (2010). 20110261.pdf (6.34 MB)
Cuperus, J.T., et al. Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc. Natl. Acad. Sci. U.S.A. 107, 466-71 (2010). 20018656.pdf (1.49 MB)

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