Publications

2007

Howell, M.D., et al. Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting. The Plant Cell 19, 926-42 (2007). 17400893.pdf (2.22 MB)
Fahlgren, N., et al. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PloS One 2, e219 (2007). 17299599.pdf (687.08 KB)
Kasschau, K.D., et al. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biology 5, e57 (2007). 17298187.pdf (10.58 MB)

2006

Deleris, A., et al. Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313, 68-71 (2006). 16741077.pdf (337.45 KB)
Lakatos, L., et al. Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO Journal 25, 2768-80 (2006). 16724105.pdf (428.48 KB)
Fahlgren, N., et al. Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Current Biology 16, 939-44 (2006). 16682356.pdf (435.21 KB)
Yu, B., Chapman, E.J., Yang, Z., Carrington, J.C. & Chen, X. Transgenically expressed viral RNA silencing suppressors interfere with microRNA methylation in Arabidopsis. FEBS Letters 580, 3117-20 (2006). 16678167.pdf (591.62 KB)
Chiba, M., et al. Diverse suppressors of RNA silencing enhance agroinfection by a viral replicon. Virology 346, 7-14 (2006). 16300814.pdf (561.01 KB)

2005

Grey, F., et al. Identification and characterization of human cytomegalovirus-encoded microRNAs. Journal of Virology 79, 12095-9 (2005). 16140786.pdf (310.32 KB)
Xie, Z., Allen, E., Wilken, A. & Carrington, J.C. DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 102, 12984-9 (2005). 16129836.pdf (575.84 KB)
Giovannoni, S.J., et al. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309, 1242-5 (2005). 16109880.pdf (180.2 KB)
Xie, Z., et al. Expression of Arabidopsis MIRNA genes. Plant Physiology 138, 2145-54 (2005). 16040653.pdf (526.66 KB)
Carrington, J.C. Small RNAs and Arabidopsis. A fast forward look. Plant Physiology 138, 565-6 (2005). 15955917.pdf (38.71 KB)
Allen, E., Xie, Z., Gustafson, A.M. & Carrington, J.C. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207-21 (2005). 15851028.pdf (1.02 MB)
Wessler, S.R. & Carrington, J.C. The consequences of gene and genome duplication in plants. Current Opinion in Plant Biology 8, 119-21 (2005). 15752989.pdf (57.71 KB)
Gustafson, A.M., et al. ASRP: the Arabidopsis Small RNA Project Database. Nucleic Acids Research 33, D637-40 (2005). 15608278.pdf (311.59 KB)

2004

Allen, E., et al. Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana. Nature Genetics 36, 1282-90 (2004). 15565108.pdf (362.78 KB)
Lippman, Z., et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 430, 471-6 (2004). 15269773.pdf (592.5 KB)
Zilberman, D., et al. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Current Biology 14, 1214-20 (2004). 15242620.pdf (396.57 KB)
Chapman, E.J., Prokhnevsky, A.I., Gopinath, K., Dolja, V.V. & Carrington, J.C. Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. Genes & Development 18, 1179-86 (2004). 15131083.pdf (181.72 KB)

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