Resources
Bioinformatics
| ASRP Database |
The Arabidopsis Small RNA Project seeks to characterize and functionally analyze the two major classes of endogenous small RNAs - microRNAs (miRNAs) and short-interferring RNAs (siRNAs).
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| CASHX | The CASHX Pipeline is used to process read data output from Illumina and other HTS technologies. The pipeline can be used to parse, map, quantify and manage large quanities of sequence data. |
| TargetFinder | Targetfinder predicts small RNA targets in a sequence database using a plant-based scoring metric. Click link to download gzipped perl script. |
| MASS | Mapping and Alignment with Short Sequences (MASS). |