The Cache ASsisted Hash Search with Xor logic (CASHX) Pipeline can be used to parse, map, quantify and manage large quantities of sequence data. CASHX is a set of tools that can be used together, or as independent modules on their own. The reference genome alignment tools can be used with any reference sequence in fasta format. The pipeline was designed and tested using Arabidopsis thaliana small RNA reads generated using an Illumina 1G.
|Current Production Release||Date||Download|
|All Current Releases||Date||Download|
|Release 2.0 (Beta)||03/11/2009||CASHX_2.0.tar.gz|
Fahlgren N., Sullivan, C.M., Kasschau, K.D., Chapman, E.J., Cumbie, J.S., Montgomery, T.A., Gilbert, S.D., Dasenko, M., Backman T.W., Givan, S.A., Carrington, J.C. (2009) Computational and analytical framework for small RNA profiling by high-throughput sequencing. RNA 15, 992-1002.
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