Target Finder
Targetfinder predicts small RNA targets in a sequence database using a plant-based scoring metric. Click link to download gzipped perl script.
Downloads
| Current Production Release | Date | Download |
| Release 1.6 | 08/13/2010 | TargetFinder_1.6.tar.gz |
| Current Production Release | Date | Download |
| Release 1.6 | 08/13/2010 | TargetFinder_1.6.tar.gz |
| Release 1.5 | 10/08/2010 | TargetFinder_1.5.tar.gz |
| Release 1.4 | 08/04/2009 | TargetFinder_1.4.tar.gz |
| Release 1.3 | 05/28/2009 | TargetFinder_1.3.tar.gz |
| Release 1.2 | 04/10/2009 | TargetFinder_1.2.tar.gz |
| Release 1.1 | 01/30/2009 | TargetFinder_1.1.tar.gz |
Known Problems
- Release 1.5 - Reverse strand search problem
- Release 1.4 - Fixed fasta header problem with white space
- Release 1.3 - Fixed fasta header problem with special characters
- Release 1.2 - None
- Release 1.1 - Strand dependence, case sensitive, no coordinate mapping of target
Publication
- Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC. (2007) High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS ONE 2, e219.
- Allen E, Xie Z, Gustafson AM, Carrington JC. (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207-21.
Help and Bug Reports
Please submit your questions or bug reports here.